Package index • BioCro

All functions

add_time_to_weather_data(): Add a time component to input
annualDB annualDB2: Miscanthus dry biomass data.
catm_data: Global annual mean atmopspheric CO2 levels
soybean_weather: Champaign, IL weather data for Soybean-BioCro
weather: Champaign, IL weather data
compare_model_output(): Compare new and stored results for a BioCro model test case
crop_model_definitions: Crop model definitions
default_ode_solvers: Default ODE solver settings
validate_dynamical_system_inputs(): Validating dynamical system inputs
get_all_modules() get_all_quantities() get_all_ode_solvers(): Get lists of modules, quantities, and solvers
get_growing_season_climate(): Truncate weather data to one growing season
miscanthus_x_giganteus: Miscanthus model definition
model_test_case(): Define BioCro model test cases
model_testing: The BioCro model testing system
initialize_csv() add_csv_row() update_csv_cases(): Define and modify BioCro module test case files
module_creators(): Create instances of modules
module_paste(): Prepend library name to module names
module_testing: The BioCro module testing system
module_write(): Generate a BioCro module header file.
module_info() quantity_list_from_names() evaluate_module() module_response_curve(): BioCro module functions
obsBea: Miscanthus assimilation field data
obsBeaC: Complete Miscanthus assimilation field data
obsNaid: Miscanthus assimilation data
partial_run_biocro() partial_evaluate_module(): Convenience Functions for Partial Application
run_biocro(): Simulate Crop Growth with BioCro
run_model_test_cases(): Run BioCro model test cases
soil_parameters: Soil properties
soybean: Soybean-BioCro model definition
soybean_clock: Soybean-BioCro circadian clock model definition
system_derivatives(): Calculate Derivatives for Differential Quantities
test_module() case() cases_from_csv(): Run BioCro module test cases
test_module_library(): Run module test cases for an entire BioCro module library
Time Variable time: The `time` variable in BioCro
update_stored_model_results(): Updated stored result for a BioCro model test case
willow: Willow model definition